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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58915891_58916410_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58915891 - 58916410
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTTCCTTTCTT
Flanking Amino Acid:
LREHENSTLDRHLDFFEMLR
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
72.6
38.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
88.9
0.88
0.6
88.5
21
Minor 5ss
29.4
-2.4
3.2
40.9
45.4
Minor BPS
48.5
-0
3.6
87.87
37.8

Associated Gene:

Gene:
DAAM1
Ensembl Gene ID:
ENSAPLG00000013283
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022235
58852098 - 58937695
85598
ENSAPLT00000013897
58865469 - 58937695
72227
ENSAPLT00000041843
58852098 - 58937695
85598