About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58916990_58917099_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58916990 - 58917099
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TCCTCCTGTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAG
U12 Branch Point Sequence:
CTTCTCCCAGCC
Flanking Amino Acid:
SILHHCLQMPYKRSGNTVQY
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
71.5
33.2
Major BPS
44.5
-0.3
1.6
55.8
41.7
Major PPT
76.2
0.59
0.9
68.5
37.3
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
43.1
-0.5
2
56.62
41.7

Associated Gene:

Gene:
DAAM1
Ensembl Gene ID:
ENSAPLG00000013283
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041843
58852098 - 58937695
85598
ENSAPLT00000022235
58852098 - 58937695
85598
ENSAPLT00000013897
58865469 - 58937695
72227