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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58923186_58924310_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58923186 - 58924310
Intron Length:
1125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TCTCCCCTATTT
Flanking Amino Acid:
DFFVSSNSRQKEDAIDDTLS
Intron Amino Acid Position:
725

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
88.5
0.87
0.7
85.2
29.1
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
52.1
0.14
2
74.09
42.9

Associated Gene:

Gene:
DAAM1
Ensembl Gene ID:
ENSAPLG00000013283
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022235
58852098 - 58937695
85598