Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58931476_58931609_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58931476 - 58931609

Intron Length:

134

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCAAGTCAC

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCCCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

CGTCCCTCACCT

Flanking Amino Acid:

RVAEVKPKVEAIRAGSKAVL

Intron Amino Acid Position:

789

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.9

1.13

0.7

81.1

36.1

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

0.83

0.7

81.7

23.1

Minor 5ss

24.2

-3

3.7

34.7

41.7

Minor BPS

51.4

0.12

1.9

70.65

45.7

Associated Gene:

Gene:

DAAM1

Ensembl Gene ID:

ENSAPLG00000013283

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041843

58852098 - 58937695

85598

ENSAPLT00000022235

58852098 - 58937695

85598

ENSAPLT00000013897

58865469 - 58937695

72227