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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58932623_58934878_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58932623 - 58934878
Intron Length:
2256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCAGG
5'SS Class:
major
3'SS Sequence:
CCGTTTCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAC
U12 Branch Point Sequence:
CCGTTTCCAACA
Flanking Amino Acid:
LRDIPQAAKVNMTELEKEIN
Intron Amino Acid Position:
881

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
66.4
45.1
Major BPS
69.9
0.49
0.9
61.1
36.4
Major PPT
70.5
0.46
0.9
65.8
34.8
Minor 5ss
40.5
-1.1
2.9
49.1
41.3
Minor BPS
44.7
-0.4
1.8
50.97
41.2

Associated Gene:

Gene:
DAAM1
Ensembl Gene ID:
ENSAPLG00000013283
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041843
58852098 - 58937695
85598
ENSAPLT00000022235
58852098 - 58937695
85598
ENSAPLT00000013897
58865469 - 58937695
72227