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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58934940_58935536_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58934940 - 58935536
Intron Length:
597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ATTTGTTTATTT
Flanking Amino Acid:
LRSGLRAVEAELDFQKSQVQ
Intron Amino Acid Position:
902

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
74.4
0.55
1
75.7
27
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
56
0.27
2
77.64
39.7

Associated Gene:

Gene:
DAAM1
Ensembl Gene ID:
ENSAPLG00000013283
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041843
58852098 - 58937695
85598
ENSAPLT00000022235
58852098 - 58937695
85598
ENSAPLT00000013897
58865469 - 58937695
72227