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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59039545_59041643_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59039545 - 59041643
Intron Length:
2099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATAATAATAATA
Flanking Amino Acid:
TVAEMEQFMKNLTEAIQNGV
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
80
0.75
1
78.6
31
Major PPT
85.8
0.81
0.7
77.3
31.4
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
46
-0.3
1.8
57.6
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009366
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018578
59033655 - 59048448
14794
ENSAPLT00000009764
59039188 - 59048589
9402
ENSAPLT00000026773
59038857 - 59048448
9592