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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59041765_59043376_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59041765 - 59043376
Intron Length:
1612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGCTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
CTTTTTTTCATA
Flanking Amino Acid:
FFAGTVVSTIGYGTLRPKTA
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
78.8
38.3
Major BPS
74.8
0.62
1
67
39.8
Major PPT
86.5
0.82
0.6
83.5
24.9
Minor 5ss
48.4
-0.1
3.2
72.7
44.5
Minor BPS
57.9
0.24
1.7
69.67
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009366
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018578
59033655 - 59048448
14794
ENSAPLT00000009764
59039188 - 59048589
9402
ENSAPLT00000026773
59038857 - 59048448
9592