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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59043544_59045381_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59043544 - 59045381
Intron Length:
1838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
GATAATTGAATC
Flanking Amino Acid:
KFLYEKGMRKKKIKFLTLLF
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
78.1
36.6
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
90.3
0.91
0.7
88.4
28.7
Minor 5ss
34.5
-1.8
3.3
50.2
46
Minor BPS
47.6
-0.2
1.6
55.35
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009366
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026773
59038857 - 59048448
9592
ENSAPLT00000018578
59033655 - 59048448
14794
ENSAPLT00000009764
59039188 - 59048589
9402