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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59197043_59199412_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59197043 - 59199412
Intron Length:
2370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTAA
5'SS Class:
major
3'SS Sequence:
AAATGCCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTTCTCTAAACT
Flanking Amino Acid:
NISDGRPKSADLIGWMDYNK
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
66.9
34.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
68.9
0.43
1
63.3
43
Minor 5ss
41.5
-0.9
3.2
54.8
49.4
Minor BPS
65.5
0.56
1.7
81.89
39.4

Associated Gene:

Gene:
DACT1
Ensembl Gene ID:
ENSAPLG00000017056
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020879
59195184 - 59203680
8497