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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59199569_59201205_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59199569 - 59201205
Intron Length:
1637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTATTTTTATAG
Flanking Amino Acid:
HLETDSRPSSGFYELSDGAS
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
72.3
39
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
84.5
0.78
0.7
80
32
Minor 5ss
31
-2.2
3.2
39.6
45.9
Minor BPS
52.4
-0
1.7
60.79
41.3

Associated Gene:

Gene:
DACT1
Ensembl Gene ID:
ENSAPLG00000017056
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020879
59195184 - 59203680
8497