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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59201339_59203314_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59201339 - 59203314
Intron Length:
1976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
CGTTTGTCATCT
Flanking Amino Acid:
ENILLLRRQLNCLRRRDAGL
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
58.5
40.7
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
88
0.85
0.8
80.2
37.3
Minor 5ss
33.8
-1.8
3
40.2
39.7
Minor BPS
43.5
-0.4
2.4
64.13
46.2

Associated Gene:

Gene:
DACT1
Ensembl Gene ID:
ENSAPLG00000017056
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020879
59195184 - 59203680
8497