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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5920677_5929673_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5920677 - 5929673
Intron Length:
8997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGAAGT
5'SS Class:
major
3'SS Sequence:
TAATGTGCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTGTGCTAAATA
Flanking Amino Acid:
VTKDEGRKRNVPISDEEEGG
Intron Amino Acid Position:
970

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
71.9
39.5
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
70.6
0.46
1
66.4
44.7
Minor 5ss
30.2
-2.3
3
41.4
44.7
Minor BPS
55.4
0.17
2.1
70.56
42.6

Associated Gene:

Gene:
KIAA1549L
Ensembl Gene ID:
ENSAPLG00000008459
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008784
5894635 - 5954320
59686