Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59263219_59267877_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

59263219 - 59267877

Intron Length:

4659

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAACTCA

5'SS Class:

strong_major

3'SS Sequence:

GTATGATATGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ACGATTTTAATG

Flanking Amino Acid:

VTSLSKGPSQEESQRDAQVV

Intron Amino Acid Position:

1400

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

35.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

62.4

0.28

43.7

Minor 5ss

43.5

-0.7

2.9

56.9

47.3

Minor BPS

51.7

-0

1.4

49.15

39.6

Associated Gene:

Gene:

KIAA0586

Ensembl Gene ID:

ENSAPLG00000007055

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007360

59240305 - 59306919

66615