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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59268015_59269538_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59268015 - 59269538
Intron Length:
1524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTTTCTGACTT
Flanking Amino Acid:
LSPGQLAQTAETLGDADTSH
Intron Amino Acid Position:
1354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74.2
37.1
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
77.7
0.62
0.8
74.2
29.3
Minor 5ss
47.6
-0.2
2.8
64.3
47.2
Minor BPS
63.6
0.51
1.7
84.15
37

Associated Gene:

Gene:
KIAA0586
Ensembl Gene ID:
ENSAPLG00000007055
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007360
59240305 - 59306919
66615