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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59273990_59274500_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59273990 - 59274500
Intron Length:
511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTTTA
5'SS Class:
major
3'SS Sequence:
TCTTACATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
ATATTCTTACAT
Flanking Amino Acid:
VAEEPLHSRAVEMSVANDEE
Intron Amino Acid Position:
1145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
73.1
34
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
77.4
0.62
0.8
74.8
34.4
Minor 5ss
40.3
-1.1
3
49.9
46.4
Minor BPS
59.8
0.39
1.7
76.23
40

Associated Gene:

Gene:
KIAA0586
Ensembl Gene ID:
ENSAPLG00000007055
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007360
59240305 - 59306919
66615