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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59275439_59277011_R

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
59275439 - 59277011
Intron Length:
1573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGTTTTAT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTTATT
Flanking Amino Acid:
VPSTAITTVRESLVPTPLPT
Intron Amino Acid Position:
1017

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.5
0.13
1.1
59.3
35.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.7
0.87
0.6
84.5
23.5
Minor 5ss
43.9
-0.7
2.7
53.7
44.7
Minor BPS
69.2
0.69
1.5
86.8
32.8

Associated Gene:

Gene:
KIAA0586
Ensembl Gene ID:
ENSAPLG00000007055
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007360
59240305 - 59306919
66615