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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59277203_59277816_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59277203 - 59277816
Intron Length:
614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CCTTCATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TGTTCCTTCATT
Flanking Amino Acid:
EDSESVTSDIVQVAGGGGFQ
Intron Amino Acid Position:
953

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.5
41.9
Major BPS
75
0.62
1.1
77.2
36
Major PPT
83.6
0.76
0.8
80.7
30.1
Minor 5ss
35.3
-1.7
2.7
39.4
40.3
Minor BPS
73.9
0.83
1.7
88.65
36.5

Associated Gene:

Gene:
KIAA0586
Ensembl Gene ID:
ENSAPLG00000007055
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007360
59240305 - 59306919
66615