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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59284059_59285300_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59284059 - 59285300
Intron Length:
1242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGATT
5'SS Class:
major
3'SS Sequence:
CTGTCTTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
AGATACTTAATA
Flanking Amino Acid:
ALPPVDAVIQTPEDLHSEEE
Intron Amino Acid Position:
821

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
77.1
37.5
Major BPS
80
0.75
1
78.6
31
Major PPT
74.5
0.55
1
78.8
33.5
Minor 5ss
44.4
-0.6
3.2
66.1
45.1
Minor BPS
65.2
0.47
1.5
68.95
36.7

Associated Gene:

Gene:
KIAA0586
Ensembl Gene ID:
ENSAPLG00000007055
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007360
59240305 - 59306919
66615