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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59285409_59286573_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59285409 - 59286573
Intron Length:
1165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTGTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTTCAGACTG
Flanking Amino Acid:
KKDPPQLSVQVLPNVDIDSI
Intron Amino Acid Position:
785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
87
27.8
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
72.9
0.52
0.9
65.6
41
Minor 5ss
46.4
-0.4
2.5
62.6
42.2
Minor BPS
46.6
-0.3
2
60.59
41.6

Associated Gene:

Gene:
KIAA0586
Ensembl Gene ID:
ENSAPLG00000007055
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007360
59240305 - 59306919
66615