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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59286762_59287696_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59286762 - 59287696
Intron Length:
935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
AAACTTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTGAAAACT
Flanking Amino Acid:
GHLIPMAIPLGQTQISDISL
Intron Amino Acid Position:
722

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
68.5
0.42
0.9
66.3
39.6
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
47.9
-0
2.5
80.09
42.1

Associated Gene:

Gene:
KIAA0586
Ensembl Gene ID:
ENSAPLG00000007055
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007360
59240305 - 59306919
66615