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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59295646_59296549_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
59295646 - 59296549
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACTTT
5'SS Class:
weak_major
3'SS Sequence:
GTTTCAATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TCTGTTTCAATT
Flanking Amino Acid:
WKSDMNDLIKSKKTAIASDL
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
73.8
37.5
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
79
0.65
0.9
75.1
38.7
Minor 5ss
68.3
0.62
2.4
81.8
38.5
Minor BPS
54.6
0.22
1.6
70.72
41.5

Associated Gene:

Gene:
KIAA0586
Ensembl Gene ID:
ENSAPLG00000007055
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007360
59240305 - 59306919
66615