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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59296592_59297675_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59296592 - 59297675
Intron Length:
1084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTAC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ATTTCAATATCT
Flanking Amino Acid:
LREQMHNIVQEADLWKSDMN
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.4
33.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
82.7
0.73
0.7
81
31
Minor 5ss
36.4
-1.5
3.4
49.2
47.3
Minor BPS
53.1
0.17
2.1
81.09
39.9

Associated Gene:

Gene:
KIAA0586
Ensembl Gene ID:
ENSAPLG00000007055
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007360
59240305 - 59306919
66615