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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59297822_59298636_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59297822 - 59298636
Intron Length:
815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TGAAACTTAAAA
Flanking Amino Acid:
NQTGWHSMVDRPTALHVDSC
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
83.8
27.2
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
82.8
0.74
0.8
82.5
27.8
Minor 5ss
35.4
-1.7
2.8
44.9
43.2
Minor BPS
55.6
0.17
1.7
64.99
40.1

Associated Gene:

Gene:
KIAA0586
Ensembl Gene ID:
ENSAPLG00000007055
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007360
59240305 - 59306919
66615