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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59310953_59313538_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59310953 - 59313538
Intron Length:
2586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAA
U12 Branch Point Sequence:
ACTGTTTGAAGC
Flanking Amino Acid:
FTSREVRPEEMTCSDHCLQK
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
85
26.2
Major BPS
69.4
0.48
1.2
63.4
44.3
Major PPT
85
0.79
0.7
77
31.8
Minor 5ss
41.1
-1
2.5
50.4
46.1
Minor BPS
45.6
-0.3
1.8
52.17
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025019
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023816
59310460 - 59313673
3214