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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59326989_59327873_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59326989 - 59327873
Intron Length:
885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATTCC
5'SS Class:
major
3'SS Sequence:
TCTCTTACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTCTCTTACTG
Flanking Amino Acid:
AAAKNEKNGTGQSSDSEDLP
Intron Amino Acid Position:
1127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
69.3
36.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
82.9
0.74
0.8
77.7
29.4
Minor 5ss
39.7
-1.1
3.1
53.8
43.4
Minor BPS
60.9
0.21
1.7
68.07
40.1

Associated Gene:

Gene:
ARID4A
Ensembl Gene ID:
ENSAPLG00000006185
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006529
59325216 - 59370555
45340