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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59332437_59334644_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59332437 - 59334644
Intron Length:
2208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TACTTTACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATATACTTTACT
Flanking Amino Acid:
SDEEEERQREREEMENKGES
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
79.9
0.67
0.9
74.4
34.7
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
63
0.49
1.8
80.66
40.3

Associated Gene:

Gene:
ARID4A
Ensembl Gene ID:
ENSAPLG00000006185
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006529
59325216 - 59370555
45340