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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59334896_59336370_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59334896 - 59336370
Intron Length:
1475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TACCTTTTAAAA
Flanking Amino Acid:
KEEIELRSPRGRRRLARDAT
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.3
0.68
0.8
73.1
37.3
Minor 5ss
37
-1.5
2.8
43.2
43.8
Minor BPS
57.4
0.23
1.4
62.68
37.3

Associated Gene:

Gene:
ARID4A
Ensembl Gene ID:
ENSAPLG00000006185
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006529
59325216 - 59370555
45340