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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59338182_59338340_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
59338182 - 59338340
Intron Length:
159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCACCAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
TCCCCCCCCACC
Flanking Amino Acid:
LVYQQGGCDNIESGAVWKQI
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
1
81.7
30
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
53
0.07
0.9
51.6
23
Minor 5ss
39.7
-1.2
3.4
57.1
40.8
Minor BPS
42.3
-0.6
2.2
52.85
44.5

Associated Gene:

Gene:
ARID4A
Ensembl Gene ID:
ENSAPLG00000006185
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006529
59325216 - 59370555
45340