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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59338436_59341177_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59338436 - 59341177
Intron Length:
2742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAGCA
5'SS Class:
strong_major
3'SS Sequence:
TCGTTTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTTCTATCT
Flanking Amino Acid:
QQLYKFMEDRGTPINKPPVL
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
70.7
33.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.8
0.63
0.9
77.6
35.8
Minor 5ss
30.8
-2.2
3.3
40
45.5
Minor BPS
53.1
0.17
1.9
76.91
39.7

Associated Gene:

Gene:
ARID4A
Ensembl Gene ID:
ENSAPLG00000006185
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006529
59325216 - 59370555
45340