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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59341251_59349464_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59341251 - 59349464
Intron Length:
8214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATGA
Flanking Amino Acid:
KREEKNEEVTPEEELDPEER
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
73.1
43.9
Major BPS
100
1.24
0.5
100
0
Major PPT
87.8
0.85
0.7
83.5
31.6
Minor 5ss
38.3
-1.3
3
51.2
45.1
Minor BPS
56.4
0.2
2.1
76.51
40.6

Associated Gene:

Gene:
ARID4A
Ensembl Gene ID:
ENSAPLG00000006185
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006529
59325216 - 59370555
45340