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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59351354_59353270_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59351354 - 59353270
Intron Length:
1917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
CTTCTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
AATAACTGAACC
Flanking Amino Acid:
CLVRSFADSKFYSVARKDIK
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
81.8
31
Major BPS
61.3
0.28
1
62
30.6
Major PPT
92.7
0.96
0.6
91.6
19.6
Minor 5ss
40
-1.1
2.9
57.3
41.2
Minor BPS
54.9
0.13
1.7
65.63
38.7

Associated Gene:

Gene:
ARID4A
Ensembl Gene ID:
ENSAPLG00000006185
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006529
59325216 - 59370555
45340