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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59355418_59356020_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59355418 - 59356020
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
TTTAATAATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTTTTAATAATT
Flanking Amino Acid:
SNRGRRSSIPVTEDEKEEES
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
76.9
34.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
74.5
0.55
1
71.5
42.7
Minor 5ss
42.7
-0.8
3
59
45.5
Minor BPS
56.2
0.27
1.9
78.73
37.1

Associated Gene:

Gene:
ARID4A
Ensembl Gene ID:
ENSAPLG00000006185
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006529
59325216 - 59370555
45340