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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59356290_59366846_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59356290 - 59366846
Intron Length:
10557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GACTTCATTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
GTTTCCTTGACT
Flanking Amino Acid:
KLTDASWYTVVFDDGDERTL
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81.3
32.8
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
68.7
0.42
0.9
59.3
41.4
Minor 5ss
30.6
-2.2
2.6
36.7
40.4
Minor BPS
88.5
1.29
0.9
96.53
28.3

Associated Gene:

Gene:
ARID4A
Ensembl Gene ID:
ENSAPLG00000006185
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006529
59325216 - 59370555
45340