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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59367948_59370363_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59367948 - 59370363
Intron Length:
2416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTATGC
5'SS Class:
major
3'SS Sequence:
GGATATCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TACGTATTAAAA
Flanking Amino Acid:
KTVKRLVKVKVVLKGDNSTQ
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
59.7
40.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
71.3
0.48
1
66.3
44.7
Minor 5ss
37
-1.5
3.3
50.9
45.6
Minor BPS
48.5
-0.1
1.8
58.44
40.9

Associated Gene:

Gene:
ARID4A
Ensembl Gene ID:
ENSAPLG00000006185
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006529
59325216 - 59370555
45340