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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59384213_59384744_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59384213 - 59384744
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATCC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATCAATT
Flanking Amino Acid:
IREEAEKYAKESLKEEDESD
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
29.6
Major BPS
100
1.24
0.5
100
0
Major PPT
72.4
0.5
1
70.7
39.1
Minor 5ss
39.2
-1.2
3
51.6
45.1
Minor BPS
69.2
0.68
1.8
89.82
34.1

Associated Gene:

Gene:
PSMA3
Ensembl Gene ID:
ENSAPLG00000015841
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016523
59384168 - 59395404
11237