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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59385020_59387180_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59385020 - 59387180
Intron Length:
2161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TACTTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TACTTCTTTACA
Flanking Amino Acid:
CRDVVKEVAKIIYIVHDEVK
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
85.6
0.8
0.8
79.9
31.8
Minor 5ss
41.2
-1
3.1
58.3
39.3
Minor BPS
64.9
0.46
1.6
71.72
40.6

Associated Gene:

Gene:
PSMA3
Ensembl Gene ID:
ENSAPLG00000015841
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016523
59384168 - 59395404
11237