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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59387228_59390728_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59387228 - 59390728
Intron Length:
3501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ATTCTCTTAAGT
Flanking Amino Acid:
AAKTEIEKLQMKEMTCRDVV
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
74.2
37.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.4
0.73
0.8
76.9
32
Minor 5ss
45.8
-0.4
2.9
65.2
46
Minor BPS
68.8
0.67
1.6
83.49
37.3

Associated Gene:

Gene:
PSMA3
Ensembl Gene ID:
ENSAPLG00000015841
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016523
59384168 - 59395404
11237