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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59390795_59391744_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59390795 - 59391744
Intron Length:
950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
GTTTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTTAACTAAACT
Flanking Amino Acid:
YMIDPSGVSYGYWGCAIGKA
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.2
77.8
38.7
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
90.5
0.91
0.7
89
28.1
Minor 5ss
35.3
-1.7
2.8
41.7
38.2
Minor BPS
64
0.52
1.9
85.99
39.7

Associated Gene:

Gene:
PSMA3
Ensembl Gene ID:
ENSAPLG00000015841
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016523
59384168 - 59395404
11237