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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59392686_59393665_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59392686 - 59393665
Intron Length:
980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GCATTTTCATTT
Flanking Amino Acid:
LFNVDRHVGMAVAGLLADAR
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.2
28.3
Major BPS
100
1.24
0.5
100
0
Major PPT
85.4
0.8
0.8
82.7
32.9
Minor 5ss
35.2
-1.7
2.8
40.3
40.2
Minor BPS
45.5
-0.2
1.7
56.79
40.5

Associated Gene:

Gene:
PSMA3
Ensembl Gene ID:
ENSAPLG00000015841
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016523
59384168 - 59395404
11237