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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59393790_59394568_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59393790 - 59394568
Intron Length:
779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
GAGACTTCCATT
Flanking Amino Acid:
EYAMKAVENSSTAIGIRCKD
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.2
26.3
Major BPS
65
0.37
1.3
76.1
38
Major PPT
87.1
0.84
0.7
84.6
30.3
Minor 5ss
38.2
-1.3
3.1
49.9
46.6
Minor BPS
43
-0.4
1.9
54.67
41.4

Associated Gene:

Gene:
PSMA3
Ensembl Gene ID:
ENSAPLG00000015841
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016523
59384168 - 59395404
11237