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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59394652_59395383_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59394652 - 59395383
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGGGA
5'SS Class:
major
3'SS Sequence:
TTTTCTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
TCTTGCTGAGTA
Flanking Amino Acid:
MSSIGTGYDLSASTFSP
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.1
40.8
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
89.3
0.88
0.6
88.8
20.5
Minor 5ss
22.7
-3.1
3.2
19.9
37.9
Minor BPS
48.1
-0.1
2.1
63.86
43

Associated Gene:

Gene:
PSMA3
Ensembl Gene ID:
ENSAPLG00000015841
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016523
59384168 - 59395404
11237