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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59398145_59399294_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59398145 - 59399294
Intron Length:
1150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCAATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTTCTCAATG
Flanking Amino Acid:
AKPNCVAWLGGAIFGALQDI
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.1
36.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
75.6
0.58
0.9
71.6
33.1
Minor 5ss
33.8
-1.8
2.9
41.1
44.9
Minor BPS
69.8
0.48
1.5
75.15
37.2

Associated Gene:

Gene:
ACTR10
Ensembl Gene ID:
ENSAPLG00000016109
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016833
59397963 - 59410138
12176