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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59403311_59403709_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59403311 - 59403709
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTGTTCTAACT
Flanking Amino Acid:
AKGQSLPSVMGSVPEDIVED
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.1
38.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.2
0.59
1
69.6
41.6
Minor 5ss
38.9
-1.2
3.3
48.7
47
Minor BPS
62.7
0.48
1.8
83.74
37.5

Associated Gene:

Gene:
ACTR10
Ensembl Gene ID:
ENSAPLG00000016109
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016833
59397963 - 59410138
12176