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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59404164_59404524_R

Intron Information:

Intron Rank:
5
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
59404164 - 59404524
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
GATCTCCGTGTAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
ATTTCCTGATCT
Flanking Amino Acid:
CGYKESLVLPIYEGIPILSC
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.3
55.7
43.9
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
64.9
0.34
1
58.8
37.9
Minor 5ss
100
1.68
0.4
100
0
Minor BPS
69.3
0.68
1.7
87.75
37.2

Associated Gene:

Gene:
ACTR10
Ensembl Gene ID:
ENSAPLG00000016109
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016833
59397963 - 59410138
12176