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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59404633_59406297_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59404633 - 59406297
Intron Length:
1665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GGTTTCCATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CTCCTGTCAATT
Flanking Amino Acid:
LTRVLFKHFEVPSVLFAPSH
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
69.2
0.43
1
63.4
38.5
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
44.2
-0.3
2.2
60.48
43.9

Associated Gene:

Gene:
ACTR10
Ensembl Gene ID:
ENSAPLG00000016109
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016833
59397963 - 59410138
12176