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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59406407_59407375_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59406407 - 59407375
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
TTTTGTTTTACA
Flanking Amino Acid:
LKEFIHMLYFRHLLVNPRDR
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.1
31
Major BPS
72.8
0.57
1
81
30.3
Major PPT
86.2
0.81
0.8
84.4
30.5
Minor 5ss
30.9
-2.2
3.6
45.9
49.3
Minor BPS
61.2
0.34
2.1
78.96
37.6

Associated Gene:

Gene:
ACTR10
Ensembl Gene ID:
ENSAPLG00000016109
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016833
59397963 - 59410138
12176