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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59407459_59407944_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59407459 - 59407944
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TAATATTTATGC
Flanking Amino Acid:
SEIKKPDVPKPIKVVQYNIN
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
77.3
33.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
92.5
0.96
0.6
88.1
21.6
Minor 5ss
44.9
-0.6
3
64.1
47.4
Minor BPS
46.3
-0.3
2
57.22
41.3

Associated Gene:

Gene:
ACTR10
Ensembl Gene ID:
ENSAPLG00000016109
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016833
59397963 - 59410138
12176