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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59408018_59410061_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59408018 - 59410061
Intron Length:
2044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
CTTCCAATAATA
Flanking Amino Acid:
VVIDLGEAFTKCGFAGETGP
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
78.5
28.9
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
86.6
0.82
0.7
85.5
29.2
Minor 5ss
33.5
-1.9
3.3
43.7
38.1
Minor BPS
50.7
0.02
1.9
67.2
39

Associated Gene:

Gene:
ACTR10
Ensembl Gene ID:
ENSAPLG00000016109
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016833
59397963 - 59410138
12176