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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59429781_59442311_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59429781 - 59442311
Intron Length:
12531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGCTG
5'SS Class:
major
3'SS Sequence:
TTTCTCTGTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CTTTCCTGATGC
Flanking Amino Acid:
TYGLDRLESEEGEEEEEDEE
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
57.3
47
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
83.7
0.76
0.9
77
37.2
Minor 5ss
33.4
-1.9
3.6
47.4
48
Minor BPS
50.4
-0
2.1
66.94
44.6

Associated Gene:

Gene:
ARMH4
Ensembl Gene ID:
ENSAPLG00000000800
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000829
59425632 - 59472599
46968